sbuild (Debian sbuild) 0.91.10 (27 June 2026) on cil.up7.fr +==============================================================================+ | pplacer 1.1~alpha19-9+ocaml1 (amd64) Fri, 23 Oct 2026 16:59:36 +0000 | +==============================================================================+ Package: pplacer Version: 1.1~alpha19-9+ocaml1 Source Version: 1.1~alpha19-9+ocaml1 Distribution: unstable-ocaml Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: No tarballs found in /home/steph/.cache/sbuild I: Unpacking /home/steph/srv/ocaml.debian.net/transitions/20261023/ben/rootfs.tar.zst to /var/cache/pbuilder/tmp/tmp.sbuild.RObTnEJbdg... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Fri, 23 Oct 2026 16:59:42 +0000 | +------------------------------------------------------------------------------+ /repo/conf/mk-release.sh ------------------------ dpkg-scanpackages: info: Wrote 1124 entries to output Packages file. I: Finished running '/repo/conf/mk-release.sh'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Fri, 23 Oct 2026 16:59:58 +0000 | +------------------------------------------------------------------------------+ Ign:1 file:/repo rebuilt InRelease Get:2 file:/repo rebuilt Release [1506 B] Get:2 file:/repo rebuilt Release [1506 B] Ign:3 file:/repo rebuilt Release.gpg Get:4 file:/repo rebuilt/main amd64 Packages [1073 kB] Get:5 http://localhost:9999/debian unstable InRelease [193 kB] Get:6 http://localhost:9999/debian unstable/main amd64 Packages [10.8 MB] Get:7 http://localhost:9999/debian unstable/non-free-firmware amd64 Packages [11.7 kB] Get:8 http://localhost:9999/debian unstable/contrib amd64 Packages [64.3 kB] Get:9 http://localhost:9999/debian unstable/non-free amd64 Packages [132 kB] Fetched 11.2 MB in 1s (11.8 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Fri, 23 Oct 2026 17:00:00 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /tmp/tmp.ben.transition-scripts.ULaBxXiOZ7/pplacer_1.1~alpha19-9+ocaml1.dsc exists in /tmp/tmp.ben.transition-scripts.ULaBxXiOZ7; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 23 Oct 2026 17:00:02 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), dh-ocaml, ocaml, ocamlbuild, libcsv-ocaml-dev, libxmlm-ocaml-dev, libbatteries-ocaml-dev, libmcl-ocaml-dev, libocamlgsl-ocaml-dev, libsqlite3-ocaml-dev, libzip-ocaml-dev, libounit-ocaml-dev, libtingea-dev, build-essential Filtered Build-Depends: debhelper-compat (= 14), dh-ocaml, ocaml, ocamlbuild, libcsv-ocaml-dev, libxmlm-ocaml-dev, libbatteries-ocaml-dev, libmcl-ocaml-dev, libocamlgsl-ocaml-dev, libsqlite3-ocaml-dev, libzip-ocaml-dev, libounit-ocaml-dev, libtingea-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-Krhgvc/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-Krhgvc/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-Krhgvc/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-Krhgvc/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-Krhgvc/apt_archive ./ Sources [806 B] Get:5 copy:/build/reproducible-path/resolver-Krhgvc/apt_archive ./ Packages [845 B] Fetched 2260 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-ocaml dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbatteries-ocaml-dev libcamlp-streams-ocaml libcamlp-streams-ocaml-dev libcompiler-libs-ocaml-dev libconfig-tiny-perl libcsv-ocaml-dev libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libfindlib-ocaml libgsl-dev libgsl28 libgslcblas0 libjson-perl libmagic-mgc libmagic1t64 libmcl-ocaml-dev libncurses-dev libncurses6 libncursesw6 libnum-ocaml libnum-ocaml-dev libocamlgsl-ocaml libocamlgsl-ocaml-dev libounit-ocaml-dev libpipeline1 libsqlite3-0 libsqlite3-dev libsqlite3-ocaml libsqlite3-ocaml-dev libstdlib-ocaml libstdlib-ocaml-dev libtingea-dev libtingea0 libtool libuchardet0 libunistring5 libxml2-16 libxmlm-ocaml-dev libzip-ocaml libzip-ocaml-dev libzstd-dev m4 man-db mcl ocaml ocaml-base ocaml-findlib ocaml-interp ocamlbuild po-debconf quickjs sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make git gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff ledit csvtool gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html ncurses-doc sqlite3-doc libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser mcl-doc ocaml-doc elpa-tuareg camlp4 libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests libbatteries-ocaml-doc libarchive-cpio-perl libjson-xs-perl libgpm2 ocaml-man libltdl-dev libfindlib-ocaml-dev ledit | readline-editor libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-ocaml dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbatteries-ocaml-dev libcamlp-streams-ocaml libcamlp-streams-ocaml-dev libcompiler-libs-ocaml-dev libconfig-tiny-perl libcsv-ocaml-dev libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libfindlib-ocaml libgsl-dev libgsl28 libgslcblas0 libjson-perl libmagic-mgc libmagic1t64 libmcl-ocaml-dev libncurses-dev libncurses6 libncursesw6 libnum-ocaml libnum-ocaml-dev libocamlgsl-ocaml libocamlgsl-ocaml-dev libounit-ocaml-dev libpipeline1 libsqlite3-0 libsqlite3-dev libsqlite3-ocaml libsqlite3-ocaml-dev libstdlib-ocaml libstdlib-ocaml-dev libtingea-dev libtingea0 libtool libuchardet0 libunistring5 libxml2-16 libxmlm-ocaml-dev libzip-ocaml libzip-ocaml-dev libzstd-dev m4 man-db mcl ocaml ocaml-base ocaml-findlib ocaml-interp ocamlbuild po-debconf quickjs sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded. 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[918 kB] Get:55 file:/repo rebuilt/main amd64 ocaml amd64 5.5.2-1~exp1+ocaml1 [19.7 MB] Get:56 file:/repo rebuilt/main amd64 libcamlp-streams-ocaml-dev amd64 5.0.1-3+ocaml1 [106 kB] Get:57 file:/repo rebuilt/main amd64 libnum-ocaml amd64 1.6-1+ocaml1 [178 kB] Get:58 file:/repo rebuilt/main amd64 libnum-ocaml-dev amd64 1.6-1+ocaml1 [439 kB] Get:59 file:/repo rebuilt/main amd64 libbatteries-ocaml-dev amd64 3.11.0-2+ocaml1 [10.1 MB] Get:60 file:/repo rebuilt/main amd64 libcsv-ocaml-dev amd64 2.4-3+ocaml1 [353 kB] Get:61 file:/repo rebuilt/main amd64 mcl amd64 1:22-282+ds-5+ocaml1 [479 kB] Get:62 file:/repo rebuilt/main amd64 libmcl-ocaml-dev amd64 1:22-282+ds-5+ocaml1 [178 kB] Get:63 file:/repo rebuilt/main amd64 libocamlgsl-ocaml amd64 1.25.1-1+ocaml1 [456 kB] Get:64 file:/repo rebuilt/main amd64 libocamlgsl-ocaml-dev amd64 1.25.1-1+ocaml1 [1124 kB] Get:65 file:/repo rebuilt/main amd64 libounit-ocaml-dev amd64 2.2.7-2+ocaml1 [1068 kB] Get:66 file:/repo rebuilt/main amd64 libsqlite3-ocaml 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Fetched 19.6 MB in 0s (55.5 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 11984 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-5_amd64.deb ... Unpacking gettext-base (1.0-5) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... 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Preparing to unpack .../68-libzip-ocaml-dev_1.14-1+ocaml1_amd64.deb ... Unpacking libzip-ocaml-dev (1.14-1+ocaml1) ... Selecting previously unselected package ocamlbuild. Preparing to unpack .../69-ocamlbuild_0.16.1-2+ocaml1_amd64.deb ... Unpacking ocamlbuild (0.16.1-2+ocaml1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../70-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-4) ... Setting up bsdextrautils (2.42.4-1) ... Setting up libgslcblas0:amd64 (2.8+dfsg-6+b1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libdebhelper-perl (14.5) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-5) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.47-4) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up quickjs (2025.04.26-1+b2) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up libsqlite3-dev:amd64 (3.53.4-2) ... Setting up libncurses6:amd64 (6.6+20260608-2) ... Setting up libstdlib-ocaml (5.5.2-1~exp1+ocaml1) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up autopoint (1.0-5) ... Setting up ocaml-base (5.5.2-1~exp1+ocaml1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up autoconf (2.73-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libnum-ocaml (1.6-1+ocaml1) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up libjson-perl (4.10000-1) ... Setting up libtingea0:amd64 (21-361-3) ... Setting up libsqlite3-ocaml (5.4.2-1+ocaml1) ... Setting up libgsl28:amd64 (2.8+dfsg-6+b1) ... Setting up automake (1:1.19-3) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up libncurses-dev:amd64 (6.6+20260608-2) ... Setting up gettext (1.0-5) ... Setting up libgsl-dev (2.8+dfsg-6+b1) ... Setting up libtool (2.6.2-3) ... Setting up libstdlib-ocaml-dev (5.5.2-1~exp1+ocaml1) ... Setting up libcamlp-streams-ocaml (5.0.1-3+ocaml1) ... Setting up dh-ocaml (3.8+ocaml1) ... Setting up libfindlib-ocaml (1.9.8-1+ocaml1) ... Setting up libocamlgsl-ocaml (1.25.1-1+ocaml1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up libcompiler-libs-ocaml-dev (5.5.2-1~exp1+ocaml1) ... Setting up ocaml-interp (5.5.2-1~exp1+ocaml1) ... Setting up mcl (1:22-282+ds-5+ocaml1) ... Setting up libtingea-dev:amd64 (21-361-3) ... Setting up libzip-ocaml (1.14-1+ocaml1) ... Setting up ocaml-findlib (1.9.8-1+ocaml1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.2-2) ... Setting up po-debconf (1.0.22) ... Setting up ocaml (5.5.2-1~exp1+ocaml1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libsqlite3-ocaml-dev (5.4.2-1+ocaml1) ... Setting up libcsv-ocaml-dev (2.4-3+ocaml1) ... Setting up libcamlp-streams-ocaml-dev (5.0.1-3+ocaml1) ... Setting up libzip-ocaml-dev (1.14-1+ocaml1) ... Setting up libxmlm-ocaml-dev (1.4.0-2+ocaml1) ... Setting up libnum-ocaml-dev (1.6-1+ocaml1) ... Setting up libocamlgsl-ocaml-dev (1.25.1-1+ocaml1) ... Setting up libmcl-ocaml-dev (1:22-282+ds-5+ocaml1) ... Setting up libounit-ocaml-dev (2.2.7-2+ocaml1) ... Setting up debhelper (14.5) ... Setting up ocamlbuild (0.16.1-2+ocaml1) ... Setting up libbatteries-ocaml-dev (3.11.0-2+ocaml1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Check architectures Fri, 23 Oct 2026 17:00:20 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Fri, 23 Oct 2026 17:00:20 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.2.11+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.2.11-1 (2026-10-15) amd64 (x86_64) Toolchain package versions: binutils_2.47.50.20261021-1 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-3 libstdc++6_16.2.0-3 linux-libc-dev_7.2.12-1 Package versions: apt_3.3.4 apt-utils_3.3.4 autoconf_2.73-2 automake_1:1.19-3 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 binutils_2.47.50.20261021-1 binutils-common_2.47.50.20261021-1 binutils-x86-64-linux-gnu_2.47.50.20261021-1 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-x86-64-linux-gnu_16.2.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-ocaml_3.8+ocaml1 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-3 g++_4:16.1.0-3 g++-16_16.2.0-3 g++-16-x86-64-linux-gnu_16.2.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-3 gcc-16-base_16.2.0-3 gcc-16-x86-64-linux-gnu_16.2.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1 groff-base_1.24.2-2 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.4 libarchive-zip-perl_1.68-1 libasan8_16.2.0-3 libatomic1_16.2.0-3 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libbatteries-ocaml-dev_3.11.0-2+ocaml1 libbinutils_2.47.50.20261021-1 libblkid1_2.42.4-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-7 libc-dev-bin_2.43-7 libc-gconv-modules-extra_2.43-7 libc6_2.43-7 libc6-dev_2.43-7 libcamlp-streams-ocaml_5.0.1-3+ocaml1 libcamlp-streams-ocaml-dev_5.0.1-3+ocaml1 libcap-ng0_0.9.6-1 libcc1-0_16.2.0-3 libcompiler-libs-ocaml-dev_5.5.2-1~exp1+ocaml1 libconfig-tiny-perl_2.30-1 libcrypt1_1:4.5.2+20251210-1 libcsv-ocaml-dev_2.4-3+ocaml1 libctf-nobfd0_2.47.50.20261021-1 libctf0_2.47.50.20261021-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libfile-stripnondeterminism-perl_1.15.1-1 libfindlib-ocaml_1.9.8-1+ocaml1 libgcc-16-dev_16.2.0-3 libgcc-s1_16.2.0-3 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-3 libgprofng0_2.47.50.20261021-1 libgsl-dev_2.8+dfsg-6+b1 libgsl28_2.8+dfsg-6+b1 libgslcblas0_2.8+dfsg-6+b1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-3 libisl23_0.28-1 libitm1_16.2.0-3 libjansson4_2.15.1-1 libjson-perl_4.10000-1 liblsan0_16.2.0-3 liblz4-1_1.10.0-10 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmcl-ocaml-dev_1:22-282+ds-5+ocaml1 libmd0_1.3.0-1 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncurses-dev_6.6+20260608-2 libncurses6_6.6+20260608-2 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnum-ocaml_1.6-1+ocaml1 libnum-ocaml-dev_1.6-1+ocaml1 libocamlgsl-ocaml_1.25.1-1+ocaml1 libocamlgsl-ocaml-dev_1.25.1-1+ocaml1 libounit-ocaml-dev_2.2.7-2+ocaml1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-3.1 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libquadmath0_16.2.0-3 libseccomp2_2.6.1-1+b1 libselinux1_3.11-2.1 libsframe3_2.47.50.20261021-1 libsmartcols1_2.42.4-1 libsqlite3-0_3.53.4-2 libsqlite3-dev_3.53.4-2 libsqlite3-ocaml_5.4.2-1+ocaml1 libsqlite3-ocaml-dev_5.4.2-1+ocaml1 libssl3t64_3.6.5-1 libstdc++-16-dev_16.2.0-3 libstdc++6_16.2.0-3 libstdlib-ocaml_5.5.2-1~exp1+ocaml1 libstdlib-ocaml-dev_5.5.2-1~exp1+ocaml1 libsystemd0_262.1-1 libtinfo6_6.6+20260608-2 libtingea-dev_21-361-3 libtingea0_21-361-3 libtool_2.6.2-3 libtsan2_16.2.0-3 libubsan1_16.2.0-3 libuchardet0_0.0.8-2+b2 libudev1_262.1-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libxml2-16_2.15.4+dfsg-1 libxmlm-ocaml-dev_1.4.0-2+ocaml1 libxxhash0_0.8.3-2+b2 libzip-ocaml_1.14-1+ocaml1 libzip-ocaml-dev_1.14-1+ocaml1 libzstd-dev_1.5.7+dfsg-4 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.2.12-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-2 mcl_1:22-282+ds-5+ocaml1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 ocaml_5.5.2-1~exp1+ocaml1 ocaml-base_5.5.2-1~exp1+ocaml1 ocaml-findlib_1.9.8-1+ocaml1 ocaml-interp_5.5.2-1~exp1+ocaml1 ocamlbuild_0.16.1-2+ocaml1 openssl-provider-legacy_3.6.5-1 patch_2.8-2 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 po-debconf_1.0.22 quickjs_2025.04.26-1+b2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Fri, 23 Oct 2026 17:00:20 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- Format: 3.0 (quilt) Source: pplacer Binary: pplacer Architecture: any Version: 1.1~alpha19-9+ocaml1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Shayan Doust Homepage: https://github.com/matsen/pplacer Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/pplacer Vcs-Git: https://salsa.debian.org/med-team/pplacer.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 14), dh-ocaml, ocaml, ocamlbuild, libcsv-ocaml-dev, libxmlm-ocaml-dev, libbatteries-ocaml-dev, libmcl-ocaml-dev, libocamlgsl-ocaml-dev, libsqlite3-ocaml-dev, libzip-ocaml-dev, libounit-ocaml-dev, libtingea-dev Package-List: pplacer deb science optional arch=any Checksums-Sha1: 59de93b7822f7ea761217bb580665f2efdceec6d 899297 pplacer_1.1~alpha19.orig-debian-tests-data.tar.gz 152d0de4b59c6e3debc04666706ff0828b9d82c0 830574 pplacer_1.1~alpha19.orig.tar.gz 7b7fea01e91b69fb4b2ae72c2315ae274501091c 35780 pplacer_1.1~alpha19-9+ocaml1.debian.tar.xz Checksums-Sha256: 8460daddda8c8796778dee24ff93ce73efd06b1a2ee2cacd2d18501cbff347c5 899297 pplacer_1.1~alpha19.orig-debian-tests-data.tar.gz 0e74f3bdaf996c6e54695e23bc2180877f2de0fadc80f0fe9d066aa445b3347c 830574 pplacer_1.1~alpha19.orig.tar.gz b63da63309ad86e249ce5132bd94d61ce9b3cddcd7d1452027a4eb49d5d2c948 35780 pplacer_1.1~alpha19-9+ocaml1.debian.tar.xz Files: 9cd28787d02dbd0bbdb573210fc381e3 899297 pplacer_1.1~alpha19.orig-debian-tests-data.tar.gz d21814136ee712949c58424016b22853 830574 pplacer_1.1~alpha19.orig.tar.gz f9b14d11d284f75a722e581082fe4d5d 35780 pplacer_1.1~alpha19-9+ocaml1.debian.tar.xz dpkg-source: warning: extracting unsigned source package (pplacer_1.1~alpha19-9+ocaml1.dsc) dpkg-source: info: extracting pplacer in /build/reproducible-path/pplacer-1.1~alpha19 dpkg-source: info: unpacking pplacer_1.1~alpha19.orig.tar.gz dpkg-source: info: unpacking pplacer_1.1~alpha19.orig-debian-tests-data.tar.gz dpkg-source: info: unpacking pplacer_1.1~alpha19-9+ocaml1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ocamlbuild dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying ocaml_stdlib dpkg-source: info: applying ocaml_bytes dpkg-source: info: applying spelling.patch dpkg-source: info: applying ocaml-batteries.patch dpkg-source: info: applying PR-337.patch dpkg-source: info: applying fix_ocaml_build_error_List.min.patch dpkg-source: info: applying no-incompatible-pointer-types.patch dpkg-source: info: applying misleading-indentation.patch dpkg-source: info: applying no_redefined_definitions.patch dpkg-source: info: applying caml_bigarray.patch dpkg-source: info: applying ocaml5-compat.patch dpkg-source: info: applying marshal_header_size.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=2 HOME=/sbuild-nonexistent LANG=fr_FR.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild MAKEFLAGS= PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -sa dpkg-buildpackage: info: source package pplacer dpkg-buildpackage: info: source version 1.1~alpha19-9+ocaml1 dpkg-buildpackage: info: source distribution unstable-ocaml dpkg-buildpackage: info: source changed by Anonymous Builder dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with=ocaml dh: warning: Implicitly activating single-binary dh addon for backwards compatibility. In compat 15+, dh: warning: this fallback will *not* happen automatically. The dh_auto_install tool will instead use a dh: warning: different default for --destdir unless the single-binary add-on is active, dh: warning: which can cause the source to produce an empty binary package dh: warning: dh: warning: To keep the existing behaviour (compat 13), please activate the single-binary addon explicitly. dh: warning: This can be done by adding "dh-sequence-single-binary" to Build-Depends or passing dh: warning: --with=single-binary to dh. dh: warning: dh: warning: If you have solved this issue differently (e.g., by passing --destdir explicitly to dh: warning: dh_auto_install or not using dh_auto_install at all) and want to silence this warning dh: warning: without activating the addon, you can do that by passing --without=single-binary to dh dh: warning: to explicitly acknowledge the change. dh: warning: dh: warning: Please see the description of the "single-binary" in "man dh" for more details of what dh: warning: it does and why this is changing from implicit behaviour to explicitly opt-in. dh_auto_clean make -j2 clean make[1]: Entering directory '/build/reproducible-path/pplacer-1.1~alpha19' rm -rf bin rm -f tests.native ocamlbuild -clean + /usr/bin/ocamlc.opt -config rm -f *.mltop make[1]: Leaving directory '/build/reproducible-path/pplacer-1.1~alpha19' dh_ocamlclean dh_clean dpkg-source -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building pplacer using existing ../pplacer_1.1~alpha19.orig-debian-tests-data.tar.gz dpkg-source: info: building pplacer using existing ../pplacer_1.1~alpha19.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building pplacer in ../pplacer_1.1~alpha19-9+ocaml1.debian.tar.xz dpkg-source: info: building pplacer in ../pplacer_1.1~alpha19-9+ocaml1.dsc debian/rules binary dh binary --with=ocaml dh: warning: Implicitly activating single-binary dh addon for backwards compatibility. In compat 15+, dh: warning: this fallback will *not* happen automatically. The dh_auto_install tool will instead use a dh: warning: different default for --destdir unless the single-binary add-on is active, dh: warning: which can cause the source to produce an empty binary package dh: warning: dh: warning: To keep the existing behaviour (compat 13), please activate the single-binary addon explicitly. dh: warning: This can be done by adding "dh-sequence-single-binary" to Build-Depends or passing dh: warning: --with=single-binary to dh. dh: warning: dh: warning: If you have solved this issue differently (e.g., by passing --destdir explicitly to dh: warning: dh_auto_install or not using dh_auto_install at all) and want to silence this warning dh: warning: without activating the addon, you can do that by passing --without=single-binary to dh dh: warning: to explicitly acknowledge the change. dh: warning: dh: warning: Please see the description of the "single-binary" in "man dh" for more details of what dh: warning: it does and why this is changing from implicit behaviour to explicitly opt-in. dh_update_autotools_config dh_autoreconf dh_ocamlinit dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pplacer-1.1~alpha19' # Fix race condition (fails due to multiple mkdirs) dh_auto_build --no-parallel make -j1 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/pplacer-1.1~alpha19' if [ ! -e bin ]; then mkdir bin; fi make pplacer.native make[3]: Entering directory '/build/reproducible-path/pplacer-1.1~alpha19' ocamlbuild pplacer.native + /usr/bin/ocamlc.opt -config + /usr/bin/ocamlopt.opt -I +unix unix.cmxa -I /usr/lib/x86_64-linux-gnu/ocaml/5.5.2/ocamlbuild /usr/lib/x86_64-linux-gnu/ocaml/5.5.2/ocamlbuild/ocamlbuildlib.cmxa myocamlbuild.ml /usr/lib/x86_64-linux-gnu/ocaml/5.5.2/ocamlbuild/ocamlbuild.cmx -o myocamlbuild + ocamlfind ocamlc -config /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/cddcore.c + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/cddcore.c cdd_src/cddcore.c: In function ‘dd_UpdateEdges’: cdd_src/cddcore.c:446:22: warning: variable ‘pos2’ set but not used [-Wunused-but-set-variable=] 446 | long count=0,pos1, pos2; | ^~~~ + mv cddcore.o cdd_src/cddcore.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/cddio.c + mv cddio.o cdd_src/cddio.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/cddlib.c + mv cddlib.o cdd_src/cddlib.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/cddlp.c + mv cddlp.o cdd_src/cddlp.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/cddmp.c + mv cddmp.o cdd_src/cddmp.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/cddproj.c + mv cddproj.o cdd_src/cddproj.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/setoper.c + mv setoper.o cdd_src/setoper.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/pplacer_cdd.c + mv pplacer_cdd.o cdd_src/pplacer_cdd.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c cdd_src/caml_cdd.c + mv caml_cdd.o cdd_src/caml_cdd.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c pam_src/pam.c + mv pam.o pam_src/pam.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c pam_src/caml_pam.c + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c pam_src/caml_pam.c In file included from /usr/lib/x86_64-linux-gnu/ocaml/5.5.2/caml/bigarray.h:20, from pam_src/caml_pam.c:2: pam_src/caml_pam.c: In function ‘caml_pam’: /usr/lib/x86_64-linux-gnu/ocaml/5.5.2/caml/mlvalues.h:366:23: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 366 | #define String_val(x) ((const char *) Bp_val(x)) | ^ pam_src/caml_pam.c:18:16: note: in expansion of macro ‘String_val’ 18 | char *keep = String_val(keep_value); | ^~~~~~~~~~ + mv caml_pam.o pam_src/caml_pam.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c pplacer_src/linear_c.c + mv linear_c.o pplacer_src/linear_c.o + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC -ccopt -Wno-incompatible-pointer-types -c pplacer_src/unix_support.c + mv unix_support.o pplacer_src/unix_support.o + /usr/bin/ocamlmklib -o cdd_src/cdd cdd_src/cddcore.o cdd_src/cddio.o cdd_src/cddlib.o cdd_src/cddlp.o cdd_src/cddmp.o cdd_src/cddproj.o cdd_src/setoper.o cdd_src/pplacer_cdd.o cdd_src/caml_cdd.o + /usr/bin/ocamlmklib -o pam_src/pplacer_pam pam_src/pam.o pam_src/caml_pam.o + /usr/bin/ocamlmklib -o pplacer_src/pplacercside pplacer_src/linear_c.o pplacer_src/unix_support.o + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pplacer.ml > pplacer_src/pplacer.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/check.ml > pplacer_src/check.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/ppatteries.ml > common_src/ppatteries.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/algMap.ml > common_src/algMap.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/mapsSets.ml > common_src/mapsSets.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/ppr.ml > common_src/ppr.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/ppr.cmo common_src/ppr.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/number.ml > common_src/number.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/mapsSets.cmo common_src/mapsSets.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/number.cmo common_src/number.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/algMap.cmo common_src/algMap.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/ppatteries.cmo common_src/ppatteries.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pplacer_run.ml > pplacer_src/pplacer_run.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/alignment.ml > common_src/alignment.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fasta.ml > pplacer_src/fasta.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/refpkg_parse.ml > pplacer_src/refpkg_parse.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/json.ml > json_src/json.ml.depends + /usr/bin/ocamllex.opt -q json_src/jsonlex.mll + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsonlex.ml > json_src/jsonlex.ml.depends + /usr/bin/ocamlyacc json_src/jsonparse.mly + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsonparse.mli > json_src/jsonparse.mli.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsontype.ml > json_src/jsontype.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsontype.cmo json_src/jsontype.ml + ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsonparse.cmi json_src/jsonparse.mli + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsonlex.cmo json_src/jsonlex.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/simple_json.ml > pplacer_src/simple_json.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/json.cmo json_src/json.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/simple_json.cmo pplacer_src/simple_json.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/refpkg_parse.cmo pplacer_src/refpkg_parse.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/linear_utils.ml > common_src/linear_utils.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/nuc_models.ml > pplacer_src/nuc_models.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/prot_models.ml > pplacer_src/prot_models.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/linear_utils.cmo common_src/linear_utils.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/stockholm.ml > pplacer_src/stockholm.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fasta.cmo pplacer_src/fasta.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/nuc_models.cmo pplacer_src/nuc_models.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/prot_models.cmo pplacer_src/prot_models.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stockholm.cmo pplacer_src/stockholm.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/check.cmo pplacer_src/check.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/classif_map.ml > pplacer_src/classif_map.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/edge_painting.ml > pplacer_src/edge_painting.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/convex.mli > pplacer_src/convex.mli.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/refpkg.ml > pplacer_src/refpkg.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/alignment.cmo common_src/alignment.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/decor.ml > pplacer_src/decor.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/myxml.ml > pplacer_src/myxml.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_id.ml > pplacer_src/tax_id.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/myxml.cmo pplacer_src/myxml.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/sql.ml > common_src/sql.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/sql.cmo common_src/sql.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_id.cmo pplacer_src/tax_id.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/decor_gtree.ml > pplacer_src/decor_gtree.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor.cmo pplacer_src/decor.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/decor_bark.ml > pplacer_src/decor_bark.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_bark.ml > pplacer_src/newick_bark.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_bark.cmo pplacer_src/newick_bark.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gtree.ml > pplacer_src/gtree.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/bark_map.ml > pplacer_src/bark_map.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/stree.ml > pplacer_src/stree.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bark_map.cmo pplacer_src/bark_map.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stree.cmo pplacer_src/stree.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stree.cmo pplacer_src/stree.ml File "pplacer_src/stree.ml", line 35, characters 12-16: 35 | | Failure "tl" -> invalid_arg "nonroot_node_ids" ^^^^ Warning 52 [fragile-literal-pattern]: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (see manual section 13.5.3) + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_gtree.ml > pplacer_src/newick_gtree.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/file_parsing.ml > common_src/file_parsing.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gtree.cmo pplacer_src/gtree.ml + /usr/bin/ocamllex.opt -q pplacer_src/newick_lexer.mll + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_lexer.ml > pplacer_src/newick_lexer.ml.depends + /usr/bin/ocamlyacc pplacer_src/newick_parser.mly + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_parser.mli > pplacer_src/newick_parser.mli.depends + ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_parser.cmi pplacer_src/newick_parser.mli + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_parse_state.ml > pplacer_src/newick_parse_state.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/placement.ml > pplacer_src/placement.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pquery.ml > pplacer_src/pquery.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placement.cmo pplacer_src/placement.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pquery_io.ml > pplacer_src/pquery_io.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery.cmo pplacer_src/pquery.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/file_parsing.cmo common_src/file_parsing.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_lexer.cmo pplacer_src/newick_lexer.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_parse_state.cmo pplacer_src/newick_parse_state.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery_io.cmo pplacer_src/pquery_io.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor_bark.cmo pplacer_src/decor_bark.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_gtree.cmo pplacer_src/newick_gtree.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/delayed.ml > common_src/delayed.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gcat_model.ml > pplacer_src/gcat_model.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/diagd.ml > pplacer_src/diagd.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/linear.ml > pplacer_src/linear.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tensor.ml > pplacer_src/tensor.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/matrix.mli > pplacer_src/matrix.mli.depends + ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/matrix.cmi pplacer_src/matrix.mli + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tensor.cmo pplacer_src/tensor.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/linear.cmo pplacer_src/linear.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/glv_arr.ml > pplacer_src/glv_arr.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/glvm.ml > pplacer_src/glvm.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glvm.cmo pplacer_src/glvm.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/glv_edge.ml > pplacer_src/glv_edge.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gstar_support.ml > pplacer_src/gstar_support.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/like_stree.ml > pplacer_src/like_stree.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glv_arr.cmo pplacer_src/glv_arr.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/diagd.cmo pplacer_src/diagd.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glv_edge.cmo pplacer_src/glv_edge.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gstar_support.cmo pplacer_src/gstar_support.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/like_stree.cmo pplacer_src/like_stree.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gmix_model.ml > pplacer_src/gmix_model.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gamma.ml > pplacer_src/gamma.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/parse_stats.ml > pplacer_src/parse_stats.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/prefs.ml > pplacer_src/prefs.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/subcommand.ml > common_src/subcommand.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/batchfile.ml > common_src/batchfile.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/batchfile.cmo common_src/batchfile.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/subcommand.cmo common_src/subcommand.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/subcommand.cmo common_src/subcommand.ml File "common_src/subcommand.ml", line 201, characters 52-65: 201 | (fun x -> f.value := Some (fv ~default:[] f @ String.nsplit x delimiter))) ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. File "common_src/subcommand.ml", line 201, characters 52-65: 201 | (fun x -> f.value := Some (fv ~default:[] f @ String.nsplit x delimiter))) ^^^^^^^^^^^^^ Warning 6 [labels-omitted]: label by was omitted in the application of this function. + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/prefs.cmo pplacer_src/prefs.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gamma.cmo pplacer_src/gamma.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/parse_stats.cmo pplacer_src/parse_stats.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/placerun.ml > pplacer_src/placerun.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_classify.ml > pplacer_src/tax_classify.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placerun.cmo pplacer_src/placerun.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_map.ml > pplacer_src/tax_map.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_seqinfo.ml > pplacer_src/tax_seqinfo.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_taxonomy.ml > pplacer_src/tax_taxonomy.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_seqinfo.cmo pplacer_src/tax_seqinfo.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_seqinfo.cmo pplacer_src/tax_seqinfo.ml File "pplacer_src/tax_seqinfo.ml", line 53, characters 16-27: 53 | | Failure "check_add" -> ^^^^^^^^^^^ Warning 52 [fragile-literal-pattern]: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (see manual section 13.5.3) + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_taxonomy.cmo pplacer_src/tax_taxonomy.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor_gtree.cmo pplacer_src/decor_gtree.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/delayed.cmo common_src/delayed.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gcat_model.cmo pplacer_src/gcat_model.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gmix_model.cmo pplacer_src/gmix_model.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gmix_model.cmo pplacer_src/gmix_model.ml File "pplacer_src/gmix_model.ml", line 54, characters 4-19: 54 | Diagd.multi_exp model.tensor model.diagdq model.rates bl ^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: label dst was omitted in the application of this function. + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_classify.cmo pplacer_src/tax_classify.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_map.cmo pplacer_src/tax_map.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/refpkg.cmo pplacer_src/refpkg.ml + ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/convex.cmi pplacer_src/convex.mli + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edge_painting.cmo pplacer_src/edge_painting.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/core.ml > pplacer_src/core.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fig.mli > pplacer_src/fig.mli.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/minimization.ml > pplacer_src/minimization.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/three_tax.ml > pplacer_src/three_tax.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/integration.ml > pplacer_src/integration.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/minimization.cmo pplacer_src/minimization.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/minimization.cmo pplacer_src/minimization.ml File "pplacer_src/minimization.ml", line 87, characters 8-20: 87 | Gsl.Min.make Gsl.Min.BRENT f start left right in ^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels min, lo, up were omitted in the application of this function. + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/integration.cmo pplacer_src/integration.ml + ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fig.cmi pplacer_src/fig.mli + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/three_tax.cmo pplacer_src/three_tax.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fantasy.ml > pplacer_src/fantasy.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/string_matrix.ml > pplacer_src/string_matrix.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/string_matrix.cmo pplacer_src/string_matrix.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/map_seq.ml > pplacer_src/map_seq.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/seq_post.ml > pplacer_src/seq_post.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/seq_post.cmo pplacer_src/seq_post.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/multiprocessing.mli > pplacer_src/multiprocessing.mli.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/phyloxml.ml > pplacer_src/phyloxml.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/placerun_io.ml > pplacer_src/placerun_io.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/biom.ml > pplacer_src/biom.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/version.ml > common_src/version.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/biom.cmo pplacer_src/biom.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/version.cmo common_src/version.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/seq_group.ml > pplacer_src/seq_group.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/classif_map.cmo pplacer_src/classif_map.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/core.cmo pplacer_src/core.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fantasy.cmo pplacer_src/fantasy.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fantasy.cmo pplacer_src/fantasy.ml File "pplacer_src/fantasy.ml", line 87, characters 11-30: 87 | let fm = make_fantasy_matrix max_strike_box max_strikes in ^^^^^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels max_strike_box, max_strikes were omitted in the application of this function. + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/map_seq.cmo pplacer_src/map_seq.ml + ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/multiprocessing.cmi pplacer_src/multiprocessing.mli + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/phyloxml.cmo pplacer_src/phyloxml.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placerun_io.cmo pplacer_src/placerun_io.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/seq_group.cmo pplacer_src/seq_group.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pplacer_run.cmo pplacer_src/pplacer_run.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pplacer.cmo pplacer_src/pplacer.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/ppr.cmx common_src/ppr.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/mapsSets.cmx common_src/mapsSets.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/number.cmx common_src/number.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/algMap.cmx common_src/algMap.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/ppatteries.cmx common_src/ppatteries.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules json_src/jsonparse.ml > json_src/jsonparse.ml.depends + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsontype.cmx json_src/jsontype.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsonparse.cmx json_src/jsonparse.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/jsonlex.cmx json_src/jsonlex.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I json_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o json_src/json.cmx json_src/json.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/simple_json.cmx pplacer_src/simple_json.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/refpkg_parse.cmx pplacer_src/refpkg_parse.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/linear_utils.cmx common_src/linear_utils.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fasta.cmx pplacer_src/fasta.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/nuc_models.cmx pplacer_src/nuc_models.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/prot_models.cmx pplacer_src/prot_models.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stockholm.cmx pplacer_src/stockholm.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/check.cmx pplacer_src/check.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/convex.ml > pplacer_src/convex.ml.depends + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/myxml.cmx pplacer_src/myxml.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_bark.cmx pplacer_src/newick_bark.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bark_map.cmx pplacer_src/bark_map.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stree.cmx pplacer_src/stree.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/stree.cmx pplacer_src/stree.ml File "pplacer_src/stree.ml", line 35, characters 12-16: 35 | | Failure "tl" -> invalid_arg "nonroot_node_ids" ^^^^ Warning 52 [fragile-literal-pattern]: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (see manual section 13.5.3) + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/alignment.cmx common_src/alignment.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/sql.cmx common_src/sql.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_id.cmx pplacer_src/tax_id.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor.cmx pplacer_src/decor.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gtree.cmx pplacer_src/gtree.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/newick_parser.ml > pplacer_src/newick_parser.ml.depends + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_parse_state.cmx pplacer_src/newick_parse_state.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_parser.cmx pplacer_src/newick_parser.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placement.cmx pplacer_src/placement.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery.cmx pplacer_src/pquery.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/file_parsing.cmx common_src/file_parsing.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_lexer.cmx pplacer_src/newick_lexer.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery_io.cmx pplacer_src/pquery_io.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor_bark.cmx pplacer_src/decor_bark.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/newick_gtree.cmx pplacer_src/newick_gtree.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/matrix.ml > pplacer_src/matrix.ml.depends + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/matrix.cmx pplacer_src/matrix.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tensor.cmx pplacer_src/tensor.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/linear.cmx pplacer_src/linear.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glvm.cmx pplacer_src/glvm.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glv_arr.cmx pplacer_src/glv_arr.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/diagd.cmx pplacer_src/diagd.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/glv_edge.cmx pplacer_src/glv_edge.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gstar_support.cmx pplacer_src/gstar_support.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/like_stree.cmx pplacer_src/like_stree.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/batchfile.cmx common_src/batchfile.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/subcommand.cmx common_src/subcommand.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/subcommand.cmx common_src/subcommand.ml File "common_src/subcommand.ml", line 201, characters 52-65: 201 | (fun x -> f.value := Some (fv ~default:[] f @ String.nsplit x delimiter))) ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. File "common_src/subcommand.ml", line 201, characters 52-65: 201 | (fun x -> f.value := Some (fv ~default:[] f @ String.nsplit x delimiter))) ^^^^^^^^^^^^^ Warning 6 [labels-omitted]: label by was omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/prefs.cmx pplacer_src/prefs.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gamma.cmx pplacer_src/gamma.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/parse_stats.cmx pplacer_src/parse_stats.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placerun.cmx pplacer_src/placerun.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_seqinfo.cmx pplacer_src/tax_seqinfo.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_seqinfo.cmx pplacer_src/tax_seqinfo.ml File "pplacer_src/tax_seqinfo.ml", line 53, characters 16-27: 53 | | Failure "check_add" -> ^^^^^^^^^^^ Warning 52 [fragile-literal-pattern]: Code should not depend on the actual values of this constructor's arguments. They are only for information and may change in future versions. (see manual section 13.5.3) + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_taxonomy.cmx pplacer_src/tax_taxonomy.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/decor_gtree.cmx pplacer_src/decor_gtree.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/delayed.cmx common_src/delayed.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gcat_model.cmx pplacer_src/gcat_model.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gmix_model.cmx pplacer_src/gmix_model.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gmix_model.cmx pplacer_src/gmix_model.ml File "pplacer_src/gmix_model.ml", line 54, characters 4-19: 54 | Diagd.multi_exp model.tensor model.diagdq model.rates bl ^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: label dst was omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_classify.cmx pplacer_src/tax_classify.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_map.cmx pplacer_src/tax_map.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/refpkg.cmx pplacer_src/refpkg.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/convex.cmx pplacer_src/convex.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edge_painting.cmx pplacer_src/edge_painting.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/fig.ml > pplacer_src/fig.ml.depends + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/minimization.cmx pplacer_src/minimization.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/minimization.cmx pplacer_src/minimization.ml File "pplacer_src/minimization.ml", line 87, characters 8-20: 87 | Gsl.Min.make Gsl.Min.BRENT f start left right in ^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels min, lo, up were omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/integration.cmx pplacer_src/integration.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fig.cmx pplacer_src/fig.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/three_tax.cmx pplacer_src/three_tax.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/string_matrix.cmx pplacer_src/string_matrix.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/seq_post.cmx pplacer_src/seq_post.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/multiprocessing.ml > pplacer_src/multiprocessing.ml.depends + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/biom.cmx pplacer_src/biom.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/version.cmx common_src/version.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/classif_map.cmx pplacer_src/classif_map.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/core.cmx pplacer_src/core.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fantasy.cmx pplacer_src/fantasy.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/fantasy.cmx pplacer_src/fantasy.ml File "pplacer_src/fantasy.ml", line 87, characters 11-30: 87 | let fm = make_fantasy_matrix max_strike_box max_strikes in ^^^^^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels max_strike_box, max_strikes were omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/map_seq.cmx pplacer_src/map_seq.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/multiprocessing.cmx pplacer_src/multiprocessing.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/phyloxml.cmx pplacer_src/phyloxml.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/placerun_io.cmx pplacer_src/placerun_io.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/seq_group.cmx pplacer_src/seq_group.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pplacer_run.cmx pplacer_src/pplacer_run.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pplacer.cmx pplacer_src/pplacer.ml + ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I common_src -I json_src -I pplacer_src -I cdd_src -I pam_src common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/biom.cmx pplacer_src/check.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/matrix.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/string_matrix.cmx pplacer_src/fantasy.cmx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/pplacer.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o pplacer_src/pplacer.native Makefile:21: warning: pattern recipe did not update peer target 'pplacer.p.native'. Makefile:21: warning: pattern recipe did not update peer target 'pplacer.byte'. make[3]: Leaving directory '/build/reproducible-path/pplacer-1.1~alpha19' cp `readlink pplacer.native` bin/pplacer rm pplacer.native if [ ! -e bin ]; then mkdir bin; fi make guppy.native make[3]: Entering directory '/build/reproducible-path/pplacer-1.1~alpha19' ocamlbuild guppy.native + /usr/bin/ocamlc.opt -config + ocamlfind ocamlc -config /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy.ml > pplacer_src/guppy.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_commands.ml > pplacer_src/guppy_commands.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_adcl.ml > pplacer_src/guppy_adcl.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_cmdobjs.ml > pplacer_src/guppy_cmdobjs.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_map.ml > pplacer_src/mass_map.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mokaphy_common.ml > pplacer_src/mokaphy_common.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_mass.ml > pplacer_src/tax_mass.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_map.cmo pplacer_src/mass_map.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/uptri.ml > common_src/uptri.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_mass.cmo pplacer_src/tax_mass.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/uptri.cmo common_src/uptri.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/visualization.ml > pplacer_src/visualization.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/voronoi.mli > pplacer_src/voronoi.mli.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mokaphy_common.cmo pplacer_src/mokaphy_common.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/visualization.cmo pplacer_src/visualization.ml + ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/voronoi.cmi pplacer_src/voronoi.mli + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_cmdobjs.cmo pplacer_src/guppy_cmdobjs.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_bary.ml > pplacer_src/guppy_bary.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/barycenter.ml > pplacer_src/barycenter.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/kr_distance.ml > pplacer_src/kr_distance.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/kr_distance.cmo pplacer_src/kr_distance.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/kr_distance.cmo pplacer_src/kr_distance.ml File "pplacer_src/kr_distance.ml", line 78, characters 2-5: 78 | aux prev_subtot 0. start_data data_info_list ^^^ Warning 6 [labels-omitted]: labels subtotal, prev_a were omitted in the application of this function. + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/barycenter.cmo pplacer_src/barycenter.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_check.ml > pplacer_src/guppy_check.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_classify.ml > pplacer_src/guppy_classify.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/bayes_factor.ml > pplacer_src/bayes_factor.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_to_rdp.ml > pplacer_src/guppy_to_rdp.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/nbc.mli > pplacer_src/nbc.mli.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bayes_factor.cmo pplacer_src/bayes_factor.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_rdp.cmo pplacer_src/guppy_to_rdp.ml + ocamlfind ocamlc -c -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/nbc.cmi pplacer_src/nbc.mli + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_compress.ml > pplacer_src/guppy_compress.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_mcl.ml > pplacer_src/guppy_mcl.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_overlap.ml > pplacer_src/mass_overlap.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_overlap.cmo pplacer_src/mass_overlap.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_compress.ml > pplacer_src/mass_compress.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/mass_islands.ml > pplacer_src/mass_islands.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_mcl.cmo pplacer_src/guppy_mcl.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_compress.cmo pplacer_src/mass_compress.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_islands.cmo pplacer_src/mass_islands.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_demulti.ml > pplacer_src/guppy_demulti.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_distmat.ml > pplacer_src/guppy_distmat.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/edge_rdist.ml > pplacer_src/edge_rdist.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edge_rdist.cmo pplacer_src/edge_rdist.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_edpl.ml > pplacer_src/guppy_edpl.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/edpl.ml > pplacer_src/edpl.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edpl.cmo pplacer_src/edpl.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_epca.ml > pplacer_src/guppy_epca.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_pca.ml > pplacer_src/guppy_pca.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_splitify.ml > pplacer_src/guppy_splitify.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_splitify.cmo pplacer_src/guppy_splitify.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pca.ml > pplacer_src/pca.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules common_src/power_iteration.ml > common_src/power_iteration.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/power_iteration.cmo common_src/power_iteration.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/som.ml > pplacer_src/som.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pca.cmo pplacer_src/pca.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_pca.cmo pplacer_src/guppy_pca.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/som.cmo pplacer_src/som.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_error.ml > pplacer_src/guppy_error.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_fat.ml > pplacer_src/guppy_fat.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/tax_gtree.ml > pplacer_src/tax_gtree.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_gtree.cmo pplacer_src/tax_gtree.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_filter.ml > pplacer_src/guppy_filter.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_classify.cmo pplacer_src/guppy_classify.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_classify.cmo pplacer_src/guppy_classify.ml File "pplacer_src/guppy_classify.ml", line 683, characters 20-33: 683 | let splut = String.nsplit line "\t" |> Array.of_list in ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. File "pplacer_src/guppy_classify.ml", line 683, characters 20-33: 683 | let splut = String.nsplit line "\t" |> Array.of_list in ^^^^^^^^^^^^^ Warning 6 [labels-omitted]: label by was omitted in the application of this function. + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_fpd.ml > pplacer_src/guppy_fpd.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_heat.ml > pplacer_src/guppy_heat.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_indep_c.ml > pplacer_src/guppy_indep_c.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/indep_contrasts.ml > pplacer_src/indep_contrasts.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/indep_contrasts.cmo pplacer_src/indep_contrasts.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_info.ml > pplacer_src/guppy_info.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_islands.ml > pplacer_src/guppy_islands.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_kr.ml > pplacer_src/guppy_kr.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/gaussian_approx.ml > pplacer_src/gaussian_approx.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/r_plots.ml > pplacer_src/r_plots.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gaussian_approx.cmo pplacer_src/gaussian_approx.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/r_plots.cmo pplacer_src/r_plots.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_kr_heat.ml > pplacer_src/guppy_kr_heat.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_lpca.ml > pplacer_src/guppy_lpca.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/lpca.ml > pplacer_src/lpca.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/lpca.cmo pplacer_src/lpca.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_merge.ml > pplacer_src/guppy_merge.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_mft.ml > pplacer_src/guppy_mft.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_ograph.ml > pplacer_src/guppy_ograph.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_placemat.ml > pplacer_src/guppy_placemat.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_pmlpca.ml > pplacer_src/guppy_pmlpca.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_rarefact.ml > pplacer_src/guppy_rarefact.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rarefaction.ml > pplacer_src/rarefaction.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rarefaction.cmo pplacer_src/rarefaction.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_rarefy.ml > pplacer_src/guppy_rarefy.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_redup.ml > pplacer_src/guppy_redup.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_round.ml > pplacer_src/guppy_round.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_sing.ml > pplacer_src/guppy_sing.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_squash.ml > pplacer_src/guppy_squash.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/bootstrap.ml > pplacer_src/bootstrap.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_round.cmo pplacer_src/guppy_round.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/squashfunc.ml > pplacer_src/squashfunc.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bootstrap.cmo pplacer_src/bootstrap.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bootstrap.cmo pplacer_src/bootstrap.ml File "pplacer_src/bootstrap.ml", line 13, characters 14-37: 13 | let multa = Gsl.Randist.multinomial ^^^^^^^^^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels n, p were omitted in the application of this function. + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/squashfunc.cmo pplacer_src/squashfunc.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_to_csv.ml > pplacer_src/guppy_to_csv.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_to_json.ml > pplacer_src/guppy_to_json.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_tog.ml > pplacer_src/guppy_tog.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_trim.ml > pplacer_src/guppy_trim.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/guppy_unifrac.ml > pplacer_src/guppy_unifrac.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_adcl.cmo pplacer_src/guppy_adcl.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_bary.cmo pplacer_src/guppy_bary.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_bary.cmo pplacer_src/guppy_bary.ml File "pplacer_src/guppy_bary.ml", line 55, characters 6-34: 55 | Phyloxml.named_gtree_to_file ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels fname, tree_name were omitted in the application of this function. + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_check.cmo pplacer_src/guppy_check.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_compress.cmo pplacer_src/guppy_compress.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_demulti.cmo pplacer_src/guppy_demulti.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_distmat.cmo pplacer_src/guppy_distmat.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_edpl.cmo pplacer_src/guppy_edpl.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_epca.cmo pplacer_src/guppy_epca.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_error.cmo pplacer_src/guppy_error.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_fat.cmo pplacer_src/guppy_fat.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_filter.cmo pplacer_src/guppy_filter.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_fpd.cmo pplacer_src/guppy_fpd.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_heat.cmo pplacer_src/guppy_heat.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_indep_c.cmo pplacer_src/guppy_indep_c.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_info.cmo pplacer_src/guppy_info.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_islands.cmo pplacer_src/guppy_islands.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_kr.cmo pplacer_src/guppy_kr.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_kr_heat.cmo pplacer_src/guppy_kr_heat.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_lpca.cmo pplacer_src/guppy_lpca.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_merge.cmo pplacer_src/guppy_merge.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_mft.cmo pplacer_src/guppy_mft.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_ograph.cmo pplacer_src/guppy_ograph.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_placemat.cmo pplacer_src/guppy_placemat.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_pmlpca.cmo pplacer_src/guppy_pmlpca.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_rarefact.cmo pplacer_src/guppy_rarefact.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_rarefy.cmo pplacer_src/guppy_rarefy.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_redup.cmo pplacer_src/guppy_redup.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_sing.cmo pplacer_src/guppy_sing.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_squash.cmo pplacer_src/guppy_squash.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_squash.cmo pplacer_src/guppy_squash.ml File "pplacer_src/guppy_squash.ml", line 143, characters 4-32: 143 | Phyloxml.named_gtree_to_file ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels fname, tree_name were omitted in the application of this function. + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_csv.cmo pplacer_src/guppy_to_csv.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_json.cmo pplacer_src/guppy_to_json.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_tog.cmo pplacer_src/guppy_tog.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_trim.cmo pplacer_src/guppy_trim.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_unifrac.cmo pplacer_src/guppy_unifrac.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_commands.cmo pplacer_src/guppy_commands.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy.cmo pplacer_src/guppy.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_map.cmx pplacer_src/mass_map.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_mass.cmx pplacer_src/tax_mass.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/uptri.cmx common_src/uptri.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/voronoi.ml > pplacer_src/voronoi.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules cdd_src/cdd.ml > cdd_src/cdd.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I cdd_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o cdd_src/cdd.cmo cdd_src/cdd.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pam_src/pam_solver.ml > pam_src/pam_solver.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pam_src -I tests -I pplacer_src -I pdprune_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pam_src/pam_solver.cmo pam_src/pam_solver.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edge_rdist.cmx pplacer_src/edge_rdist.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I cdd_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o cdd_src/cdd.cmx cdd_src/cdd.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/kr_distance.cmx pplacer_src/kr_distance.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/kr_distance.cmx pplacer_src/kr_distance.ml File "pplacer_src/kr_distance.ml", line 78, characters 2-5: 78 | aux prev_subtot 0. start_data data_info_list ^^^ Warning 6 [labels-omitted]: labels subtotal, prev_a were omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pam_src -I tests -I pplacer_src -I pdprune_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pam_src/pam_solver.cmx pam_src/pam_solver.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mokaphy_common.cmx pplacer_src/mokaphy_common.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/visualization.cmx pplacer_src/visualization.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/voronoi.cmx pplacer_src/voronoi.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_cmdobjs.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/barycenter.cmx pplacer_src/barycenter.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/nbc.ml > pplacer_src/nbc.ml.depends + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bayes_factor.cmx pplacer_src/bayes_factor.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_rdp.cmx pplacer_src/guppy_to_rdp.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/nbc.cmx pplacer_src/nbc.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_overlap.cmx pplacer_src/mass_overlap.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_mcl.cmx pplacer_src/guppy_mcl.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_mcl.cmx pplacer_src/guppy_mcl.ml File "_none_", line 1: Warning 58 [no-cmx-file]: no cmx file was found in path for module Mcl, and its interface was not compiled with -opaque + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_compress.cmx pplacer_src/mass_compress.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/mass_islands.cmx pplacer_src/mass_islands.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/edpl.cmx pplacer_src/edpl.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_splitify.cmx pplacer_src/guppy_splitify.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o common_src/power_iteration.cmx common_src/power_iteration.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pca.cmx pplacer_src/pca.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_pca.cmx pplacer_src/guppy_pca.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/som.cmx pplacer_src/som.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/tax_gtree.cmx pplacer_src/tax_gtree.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_classify.cmx pplacer_src/guppy_classify.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_classify.cmx pplacer_src/guppy_classify.ml File "pplacer_src/guppy_classify.ml", line 683, characters 20-33: 683 | let splut = String.nsplit line "\t" |> Array.of_list in ^^^^^^^^^^^^^ Alert deprecated: Ppatteries.String.nsplit Use split_on_string instead. File "pplacer_src/guppy_classify.ml", line 683, characters 20-33: 683 | let splut = String.nsplit line "\t" |> Array.of_list in ^^^^^^^^^^^^^ Warning 6 [labels-omitted]: label by was omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/indep_contrasts.cmx pplacer_src/indep_contrasts.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/gaussian_approx.cmx pplacer_src/gaussian_approx.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/r_plots.cmx pplacer_src/r_plots.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/lpca.cmx pplacer_src/lpca.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rarefaction.cmx pplacer_src/rarefaction.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_round.cmx pplacer_src/guppy_round.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bootstrap.cmx pplacer_src/bootstrap.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/bootstrap.cmx pplacer_src/bootstrap.ml File "pplacer_src/bootstrap.ml", line 13, characters 14-37: 13 | let multa = Gsl.Randist.multinomial ^^^^^^^^^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels n, p were omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/squashfunc.cmx pplacer_src/squashfunc.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_adcl.cmx pplacer_src/guppy_adcl.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_bary.cmx pplacer_src/guppy_bary.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_bary.cmx pplacer_src/guppy_bary.ml File "pplacer_src/guppy_bary.ml", line 55, characters 6-34: 55 | Phyloxml.named_gtree_to_file ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels fname, tree_name were omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_check.cmx pplacer_src/guppy_check.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_compress.cmx pplacer_src/guppy_compress.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_demulti.cmx pplacer_src/guppy_demulti.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_distmat.cmx pplacer_src/guppy_distmat.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_edpl.cmx pplacer_src/guppy_edpl.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_epca.cmx pplacer_src/guppy_epca.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_error.cmx pplacer_src/guppy_error.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_fat.cmx pplacer_src/guppy_fat.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_filter.cmx pplacer_src/guppy_filter.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_fpd.cmx pplacer_src/guppy_fpd.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_heat.cmx pplacer_src/guppy_heat.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_indep_c.cmx pplacer_src/guppy_indep_c.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_info.cmx pplacer_src/guppy_info.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_islands.cmx pplacer_src/guppy_islands.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_kr.cmx pplacer_src/guppy_kr.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_kr_heat.cmx pplacer_src/guppy_kr_heat.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_lpca.cmx pplacer_src/guppy_lpca.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_merge.cmx pplacer_src/guppy_merge.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_mft.cmx pplacer_src/guppy_mft.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_ograph.cmx pplacer_src/guppy_ograph.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_placemat.cmx pplacer_src/guppy_placemat.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_pmlpca.cmx pplacer_src/guppy_pmlpca.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_rarefact.cmx pplacer_src/guppy_rarefact.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_rarefy.cmx pplacer_src/guppy_rarefy.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_redup.cmx pplacer_src/guppy_redup.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_sing.cmx pplacer_src/guppy_sing.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_squash.cmx pplacer_src/guppy_squash.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_squash.cmx pplacer_src/guppy_squash.ml File "pplacer_src/guppy_squash.ml", line 143, characters 4-32: 143 | Phyloxml.named_gtree_to_file ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels fname, tree_name were omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_csv.cmx pplacer_src/guppy_to_csv.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_to_json.cmx pplacer_src/guppy_to_json.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_tog.cmx pplacer_src/guppy_tog.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_trim.cmx pplacer_src/guppy_trim.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_unifrac.cmx pplacer_src/guppy_unifrac.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy_commands.cmx pplacer_src/guppy_commands.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/guppy.cmx pplacer_src/guppy.ml + ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplacer_src -I pam_src cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/power_iteration.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pplacer_src/kr_distance.cmx pplacer_src/barycenter.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/bayes_factor.cmx pplacer_src/biom.cmx pplacer_src/bootstrap.cmx pplacer_src/check.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/edpl.cmx pplacer_src/string_matrix.cmx pplacer_src/fantasy.cmx pplacer_src/gaussian_approx.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_adcl.cmx pplacer_src/guppy_bary.cmx pplacer_src/guppy_check.cmx pplacer_src/guppy_to_rdp.cmx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/nbc.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/guppy_classify.cmx pplacer_src/mass_overlap.cmx pplacer_src/guppy_mcl.cmx pplacer_src/mass_compress.cmx pplacer_src/mass_islands.cmx pplacer_src/guppy_compress.cmx pplacer_src/guppy_demulti.cmx pplacer_src/guppy_distmat.cmx pplacer_src/guppy_edpl.cmx pplacer_src/guppy_splitify.cmx pplacer_src/guppy_pca.cmx pplacer_src/pca.cmx pplacer_src/som.cmx pplacer_src/guppy_epca.cmx pplacer_src/guppy_error.cmx pplacer_src/tax_gtree.cmx pplacer_src/guppy_fat.cmx pplacer_src/guppy_filter.cmx pplacer_src/guppy_fpd.cmx pplacer_src/guppy_heat.cmx pplacer_src/indep_contrasts.cmx pplacer_src/guppy_indep_c.cmx pplacer_src/guppy_info.cmx pplacer_src/guppy_islands.cmx pplacer_src/r_plots.cmx pplacer_src/guppy_kr.cmx pplacer_src/guppy_kr_heat.cmx pplacer_src/lpca.cmx pplacer_src/guppy_lpca.cmx pplacer_src/guppy_merge.cmx pplacer_src/guppy_mft.cmx pplacer_src/guppy_ograph.cmx pplacer_src/guppy_placemat.cmx pplacer_src/guppy_pmlpca.cmx pplacer_src/rarefaction.cmx pplacer_src/guppy_rarefact.cmx pplacer_src/guppy_rarefy.cmx pplacer_src/guppy_redup.cmx pplacer_src/guppy_round.cmx pplacer_src/guppy_sing.cmx pplacer_src/squashfunc.cmx pplacer_src/guppy_squash.cmx pplacer_src/guppy_to_csv.cmx pplacer_src/guppy_to_json.cmx pplacer_src/guppy_tog.cmx pplacer_src/guppy_trim.cmx pplacer_src/guppy_unifrac.cmx pplacer_src/guppy_commands.cmx pplacer_src/guppy.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o pplacer_src/guppy.native Makefile:21: warning: pattern recipe did not update peer target 'guppy.p.native'. Makefile:21: warning: pattern recipe did not update peer target 'guppy.byte'. make[3]: Leaving directory '/build/reproducible-path/pplacer-1.1~alpha19' cp `readlink guppy.native` bin/guppy rm guppy.native if [ ! -e bin ]; then mkdir bin; fi make rppr.native make[3]: Entering directory '/build/reproducible-path/pplacer-1.1~alpha19' ocamlbuild rppr.native + /usr/bin/ocamlc.opt -config + ocamlfind ocamlc -config /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr.ml > pplacer_src/rppr.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_commands.ml > pplacer_src/rppr_commands.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_check.ml > pplacer_src/rppr_check.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_convex_taxids.ml > pplacer_src/rppr_convex_taxids.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_convexify.ml > pplacer_src/rppr_convexify.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_infer.ml > pplacer_src/rppr_infer.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_info.ml > pplacer_src/rppr_info.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_min_adcl.ml > pplacer_src/rppr_min_adcl.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_min_adcl_tree.ml > pplacer_src/rppr_min_adcl_tree.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pdprune_src/rppr_pdprune.ml > pdprune_src/rppr_pdprune.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pdprune_src/pd.ml > pdprune_src/pd.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pdprune_src/ptree.ml > pdprune_src/ptree.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/ptree.cmo pdprune_src/ptree.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/ptree.cmo pdprune_src/ptree.ml File "pdprune_src/ptree.ml", line 40, characters 41-53: 40 | if List.mem src l then Pend(id,bl, list_replace src dst l) else p ^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels src, dst were omitted in the application of this function. File "pdprune_src/ptree.ml", line 43, characters 20-32: 43 | else Inte(bl, list_replace src dst l, list_replace src dst r) ^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels src, dst were omitted in the application of this function. File "pdprune_src/ptree.ml", line 43, characters 44-56: 43 | else Inte(bl, list_replace src dst l, list_replace src dst r) ^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels src, dst were omitted in the application of this function. + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/pd.cmo pdprune_src/pd.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_prep_db.ml > pplacer_src/rppr_prep_db.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_prepsim.ml > pplacer_src/rppr_prepsim.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_reclass.ml > pplacer_src/rppr_reclass.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_infer.cmo pplacer_src/rppr_infer.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_ref_tree.ml > pplacer_src/rppr_ref_tree.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/rppr_reroot.ml > pplacer_src/rppr_reroot.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_check.cmo pplacer_src/rppr_check.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_convex_taxids.cmo pplacer_src/rppr_convex_taxids.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_convexify.cmo pplacer_src/rppr_convexify.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_info.cmo pplacer_src/rppr_info.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_min_adcl.cmo pplacer_src/rppr_min_adcl.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_min_adcl_tree.cmo pplacer_src/rppr_min_adcl_tree.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/rppr_pdprune.cmo pdprune_src/rppr_pdprune.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_prep_db.cmo pplacer_src/rppr_prep_db.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_prepsim.cmo pplacer_src/rppr_prepsim.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_reclass.cmo pplacer_src/rppr_reclass.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_ref_tree.cmo pplacer_src/rppr_ref_tree.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_reroot.cmo pplacer_src/rppr_reroot.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_commands.cmo pplacer_src/rppr_commands.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr.cmo pplacer_src/rppr.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/ptree.cmx pdprune_src/ptree.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/ptree.cmx pdprune_src/ptree.ml File "pdprune_src/ptree.ml", line 40, characters 41-53: 40 | if List.mem src l then Pend(id,bl, list_replace src dst l) else p ^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels src, dst were omitted in the application of this function. File "pdprune_src/ptree.ml", line 43, characters 20-32: 43 | else Inte(bl, list_replace src dst l, list_replace src dst r) ^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels src, dst were omitted in the application of this function. File "pdprune_src/ptree.ml", line 43, characters 44-56: 43 | else Inte(bl, list_replace src dst l, list_replace src dst r) ^^^^^^^^^^^^ Warning 6 [labels-omitted]: labels src, dst were omitted in the application of this function. + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/pd.cmx pdprune_src/pd.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_infer.cmx pplacer_src/rppr_infer.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_check.cmx pplacer_src/rppr_check.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_convex_taxids.cmx pplacer_src/rppr_convex_taxids.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_convexify.cmx pplacer_src/rppr_convexify.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_info.cmx pplacer_src/rppr_info.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_min_adcl.cmx pplacer_src/rppr_min_adcl.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_min_adcl_tree.cmx pplacer_src/rppr_min_adcl_tree.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pdprune_src -I tests -I pplacer_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pdprune_src/rppr_pdprune.cmx pdprune_src/rppr_pdprune.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_prep_db.cmx pplacer_src/rppr_prep_db.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_prepsim.cmx pplacer_src/rppr_prepsim.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_reclass.cmx pplacer_src/rppr_reclass.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_ref_tree.cmx pplacer_src/rppr_ref_tree.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_reroot.cmx pplacer_src/rppr_reroot.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr_commands.cmx pplacer_src/rppr_commands.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/rppr.cmx pplacer_src/rppr.ml + ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplacer_src -I pam_src -I pdprune_src cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pdprune_src/ptree.cmx pdprune_src/pd.cmx pplacer_src/biom.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/kr_distance.cmx pplacer_src/string_matrix.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pdprune_src/rppr_pdprune.cmx pplacer_src/check.cmx pplacer_src/convex.cmx pplacer_src/edge_painting.cmx pplacer_src/classif_map.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/fantasy.cmx pplacer_src/seq_post.cmx pplacer_src/map_seq.cmx pplacer_src/multiprocessing.cmx pplacer_src/seq_group.cmx pplacer_src/pplacer_run.cmx pplacer_src/rppr_check.cmx pplacer_src/rppr_convex_taxids.cmx pplacer_src/rppr_convexify.cmx pplacer_src/rppr_infer.cmx pplacer_src/rppr_info.cmx pplacer_src/rppr_min_adcl.cmx pplacer_src/rppr_min_adcl_tree.cmx pplacer_src/rppr_prep_db.cmx pplacer_src/rppr_prepsim.cmx pplacer_src/rppr_reclass.cmx pplacer_src/tax_gtree.cmx pplacer_src/rppr_ref_tree.cmx pplacer_src/rppr_reroot.cmx pplacer_src/rppr_commands.cmx pplacer_src/rppr.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o pplacer_src/rppr.native Makefile:21: warning: pattern recipe did not update peer target 'rppr.p.native'. Makefile:21: warning: pattern recipe did not update peer target 'rppr.byte'. make[3]: Leaving directory '/build/reproducible-path/pplacer-1.1~alpha19' cp `readlink rppr.native` bin/rppr rm rppr.native make[2]: Leaving directory '/build/reproducible-path/pplacer-1.1~alpha19' make[1]: Leaving directory '/build/reproducible-path/pplacer-1.1~alpha19' dh_auto_test make -j2 test make[1]: Entering directory '/build/reproducible-path/pplacer-1.1~alpha19' ocamlbuild tests.native + /usr/bin/ocamlc.opt -config + ocamlfind ocamlc -config /bin/sh: 1: git: not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: Warning: the tag "pkg_bigarray" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 102-110: Warning: the tag "pkg_unix" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/tests.ml > tests/tests.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_all_guppy.ml > tests/guppy/test_all_guppy.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_compress.ml > tests/guppy/test_compress.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/test_util.ml > tests/test_util.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o tests/test_util.cmo tests/test_util.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_edge_rdist.ml > tests/guppy/test_edge_rdist.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_edpl.ml > tests/guppy/test_edpl.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_error.ml > tests/guppy/test_error.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_fpd.ml > tests/guppy/test_fpd.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_gaussian.ml > tests/guppy/test_gaussian.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_heat.ml > tests/guppy/test_heat.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_indep_contrasts.ml > tests/guppy/test_indep_contrasts.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_islands.ml > tests/guppy/test_islands.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_kr_distance.ml > tests/guppy/test_kr_distance.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/matrix_sig.ml > pplacer_src/matrix_sig.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -modules pplacer_src/pquery_distances.ml > pplacer_src/pquery_distances.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery_distances.cmo pplacer_src/pquery_distances.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/matrix_sig.cmo pplacer_src/matrix_sig.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_lpca.ml > tests/guppy/test_lpca.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_newick_bark.ml > tests/guppy/test_newick_bark.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_overlap.ml > tests/guppy/test_overlap.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_pca.ml > tests/guppy/test_pca.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_pd.ml > tests/guppy/test_pd.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_power_iteration.ml > tests/guppy/test_power_iteration.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_rarefact.ml > tests/guppy/test_rarefact.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_rarefy.ml > tests/guppy/test_rarefy.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_som.ml > tests/guppy/test_som.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_splitify.ml > tests/guppy/test_splitify.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_trim.ml > tests/guppy/test_trim.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/guppy/test_unifrac.ml > tests/guppy/test_unifrac.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_compress.cmo tests/guppy/test_compress.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_edge_rdist.cmo tests/guppy/test_edge_rdist.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_edpl.cmo tests/guppy/test_edpl.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_error.cmo tests/guppy/test_error.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_fpd.cmo tests/guppy/test_fpd.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_gaussian.cmo tests/guppy/test_gaussian.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_heat.cmo tests/guppy/test_heat.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_indep_contrasts.cmo tests/guppy/test_indep_contrasts.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_islands.cmo tests/guppy/test_islands.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_kr_distance.cmo tests/guppy/test_kr_distance.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_lpca.cmo tests/guppy/test_lpca.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_newick_bark.cmo tests/guppy/test_newick_bark.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_overlap.cmo tests/guppy/test_overlap.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_pca.cmo tests/guppy/test_pca.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_pd.cmo tests/guppy/test_pd.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_power_iteration.cmo tests/guppy/test_power_iteration.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_rarefact.cmo tests/guppy/test_rarefact.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_rarefy.cmo tests/guppy/test_rarefy.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_som.cmo tests/guppy/test_som.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_splitify.cmo tests/guppy/test_splitify.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_trim.cmo tests/guppy/test_trim.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_unifrac.cmo tests/guppy/test_unifrac.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_all_pplacer.ml > tests/pplacer/test_all_pplacer.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_convex.ml > tests/pplacer/test_convex.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_edge_labels.ml > tests/pplacer/test_edge_labels.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_exp_priors.ml > tests/pplacer/test_exp_priors.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_like.ml > tests/pplacer/test_like.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_linear.ml > tests/pplacer/test_linear.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_matrix.ml > tests/pplacer/test_matrix.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_misc.ml > tests/pplacer/test_misc.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_newick_parser.ml > tests/pplacer/test_newick_parser.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_painting.ml > tests/pplacer/test_painting.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_placefile.ml > tests/pplacer/test_placefile.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_ppatteries.ml > tests/pplacer/test_ppatteries.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/pplacer/test_rerooting.ml > tests/pplacer/test_rerooting.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_convex.cmo tests/pplacer/test_convex.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_edge_labels.cmo tests/pplacer/test_edge_labels.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_exp_priors.cmo tests/pplacer/test_exp_priors.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_like.cmo tests/pplacer/test_like.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_linear.cmo tests/pplacer/test_linear.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_matrix.cmo tests/pplacer/test_matrix.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_misc.cmo tests/pplacer/test_misc.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_newick_parser.cmo tests/pplacer/test_newick_parser.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_painting.cmo tests/pplacer/test_painting.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_placefile.cmo tests/pplacer/test_placefile.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_ppatteries.cmo tests/pplacer/test_ppatteries.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_rerooting.cmo tests/pplacer/test_rerooting.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/rppr/test_all_rppr.ml > tests/rppr/test_all_rppr.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/rppr/test_convex_taxids.ml > tests/rppr/test_convex_taxids.ml.depends + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/rppr/test_voronoi.ml > tests/rppr/test_voronoi.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/pplacer -I tests/json -I tests/guppy -o tests/rppr/test_convex_taxids.cmo tests/rppr/test_convex_taxids.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/pplacer -I tests/json -I tests/guppy -o tests/rppr/test_voronoi.cmo tests/rppr/test_voronoi.ml + ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -modules tests/json/test_json.ml > tests/json/test_json.ml.depends + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_all_guppy.cmo tests/guppy/test_all_guppy.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_all_pplacer.cmo tests/pplacer/test_all_pplacer.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/pplacer -I tests/json -I tests/guppy -o tests/rppr/test_all_rppr.cmo tests/rppr/test_all_rppr.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/json -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/guppy -o tests/json/test_json.cmo tests/json/test_json.ml + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o tests/tests.cmo tests/tests.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o tests/test_util.cmx tests/test_util.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/pquery_distances.cmx pplacer_src/pquery_distances.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I pplacer_src -I tests -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o pplacer_src/matrix_sig.cmx pplacer_src/matrix_sig.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_compress.cmx tests/guppy/test_compress.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_edge_rdist.cmx tests/guppy/test_edge_rdist.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_edpl.cmx tests/guppy/test_edpl.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_error.cmx tests/guppy/test_error.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_fpd.cmx tests/guppy/test_fpd.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_gaussian.cmx tests/guppy/test_gaussian.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_heat.cmx tests/guppy/test_heat.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_indep_contrasts.cmx tests/guppy/test_indep_contrasts.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_islands.cmx tests/guppy/test_islands.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_kr_distance.cmx tests/guppy/test_kr_distance.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_lpca.cmx tests/guppy/test_lpca.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_newick_bark.cmx tests/guppy/test_newick_bark.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_overlap.cmx tests/guppy/test_overlap.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_pca.cmx tests/guppy/test_pca.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_pd.cmx tests/guppy/test_pd.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_power_iteration.cmx tests/guppy/test_power_iteration.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_rarefact.cmx tests/guppy/test_rarefact.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_rarefy.cmx tests/guppy/test_rarefy.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_som.cmx tests/guppy/test_som.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_splitify.cmx tests/guppy/test_splitify.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_trim.cmx tests/guppy/test_trim.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_unifrac.cmx tests/guppy/test_unifrac.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_convex.cmx tests/pplacer/test_convex.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_edge_labels.cmx tests/pplacer/test_edge_labels.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_exp_priors.cmx tests/pplacer/test_exp_priors.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_like.cmx tests/pplacer/test_like.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_linear.cmx tests/pplacer/test_linear.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_matrix.cmx tests/pplacer/test_matrix.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_misc.cmx tests/pplacer/test_misc.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_newick_parser.cmx tests/pplacer/test_newick_parser.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_painting.cmx tests/pplacer/test_painting.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_placefile.cmx tests/pplacer/test_placefile.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_ppatteries.cmx tests/pplacer/test_ppatteries.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_rerooting.cmx tests/pplacer/test_rerooting.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/pplacer -I tests/json -I tests/guppy -o tests/rppr/test_convex_taxids.cmx tests/rppr/test_convex_taxids.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/pplacer -I tests/json -I tests/guppy -o tests/rppr/test_voronoi.cmx tests/rppr/test_voronoi.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/guppy -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -o tests/guppy/test_all_guppy.cmx tests/guppy/test_all_guppy.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/pplacer -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/json -I tests/guppy -o tests/pplacer/test_all_pplacer.cmx tests/pplacer/test_all_pplacer.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/rppr -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/pplacer -I tests/json -I tests/guppy -o tests/rppr/test_all_rppr.cmx tests/rppr/test_all_rppr.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests/json -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/guppy -o tests/json/test_json.cmx tests/json/test_json.ml + ocamlfind ocamlopt -c -annot -w Z -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -I tests -I pplacer_src -I pdprune_src -I pam_src -I json_src -I common_src -I cdd_src -I tests/rppr -I tests/pplacer -I tests/json -I tests/guppy -o tests/tests.cmx tests/tests.ml + ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplacer_src -I pam_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/power_iteration.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pplacer_src/biom.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/edge_painting.cmx pplacer_src/edpl.cmx pplacer_src/kr_distance.cmx pplacer_src/gaussian_approx.cmx pplacer_src/string_matrix.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_error.cmx pplacer_src/guppy_fpd.cmx pplacer_src/guppy_heat.cmx pplacer_src/r_plots.cmx pplacer_src/tax_gtree.cmx pplacer_src/guppy_kr.cmx pplacer_src/guppy_rarefy.cmx pplacer_src/guppy_trim.cmx pplacer_src/guppy_unifrac.cmx pplacer_src/indep_contrasts.cmx pplacer_src/lpca.cmx pplacer_src/mass_compress.cmx pplacer_src/mass_islands.cmx pplacer_src/mass_overlap.cmx pplacer_src/pquery_distances.cmx pplacer_src/matrix_sig.cmx pplacer_src/pca.cmx pplacer_src/rarefaction.cmx pplacer_src/rppr_convex_taxids.cmx pplacer_src/som.cmx tests/test_util.cmx tests/guppy/test_compress.cmx tests/guppy/test_edge_rdist.cmx tests/guppy/test_edpl.cmx tests/guppy/test_error.cmx tests/guppy/test_fpd.cmx tests/guppy/test_gaussian.cmx tests/guppy/test_heat.cmx tests/guppy/test_indep_contrasts.cmx tests/guppy/test_islands.cmx tests/guppy/test_kr_distance.cmx tests/guppy/test_lpca.cmx tests/guppy/test_newick_bark.cmx tests/guppy/test_overlap.cmx tests/guppy/test_pca.cmx tests/guppy/test_pd.cmx tests/guppy/test_power_iteration.cmx tests/guppy/test_rarefact.cmx tests/guppy/test_rarefy.cmx tests/guppy/test_som.cmx tests/guppy/test_splitify.cmx tests/guppy/test_trim.cmx tests/guppy/test_unifrac.cmx tests/guppy/test_all_guppy.cmx tests/json/test_json.cmx tests/pplacer/test_convex.cmx tests/pplacer/test_edge_labels.cmx tests/pplacer/test_exp_priors.cmx tests/pplacer/test_like.cmx tests/pplacer/test_linear.cmx tests/pplacer/test_matrix.cmx tests/pplacer/test_misc.cmx tests/pplacer/test_newick_parser.cmx tests/pplacer/test_painting.cmx tests/pplacer/test_placefile.cmx tests/pplacer/test_ppatteries.cmx tests/pplacer/test_rerooting.cmx tests/pplacer/test_all_pplacer.cmx tests/rppr/test_convex_taxids.cmx tests/rppr/test_voronoi.cmx tests/rppr/test_all_rppr.cmx tests/tests.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o tests/tests.native Makefile:21: warning: pattern recipe did not update peer target 'tests.p.native'. Makefile:21: warning: pattern recipe did not update peer target 'tests.byte'. ./tests.native ................................................................................................................................................................................................................................ Ran: 224 tests in: 4.06 seconds. OK make[1]: Leaving directory '/build/reproducible-path/pplacer-1.1~alpha19' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pplacer/ dh_ocamllibinstall dh_install dh_ocamldoc dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_missing dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_fixperms dh_strip_nondeterminism dh_compress dh_installdeb dh_computeautosubstvars dh_ocaml dh_gencontrol dpkg-gencontrol: warning: Depends field of package pplacer: substitution variable ${misc:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'pplacer' in '../pplacer_1.1~alpha19-9+ocaml1_amd64.deb'. dpkg-deb: building package 'pplacer-dbgsym' in '../pplacer-dbgsym_1.1~alpha19-9+ocaml1_amd64.deb'. dpkg-genbuildinfo -O../pplacer_1.1~alpha19-9+ocaml1_amd64.buildinfo dpkg-genchanges -sa -O../pplacer_1.1~alpha19-9+ocaml1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2026-10-23T17:01:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 23 Oct 2026 17:01:42 +0000 | +------------------------------------------------------------------------------+ pplacer_1.1~alpha19-9+ocaml1_amd64.changes: ------------------------------------------- Format: 1.8 Date: Fri, 23 Oct 2026 18:59:35 +0200 Source: pplacer Binary: pplacer pplacer-dbgsym Architecture: source amd64 Version: 1.1~alpha19-9+ocaml1 Distribution: unstable-ocaml Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Anonymous Builder Description: pplacer - phylogenetic placement and downstream analysis Changes: pplacer (1.1~alpha19-9+ocaml1) unstable-ocaml; urgency=medium . * Rebuild for transition ocaml-5.5.2 Checksums-Sha1: 9908d7c18926e41e24cb022a095839f1bd3dffe4 1700 pplacer_1.1~alpha19-9+ocaml1.dsc 59de93b7822f7ea761217bb580665f2efdceec6d 899297 pplacer_1.1~alpha19.orig-debian-tests-data.tar.gz 152d0de4b59c6e3debc04666706ff0828b9d82c0 830574 pplacer_1.1~alpha19.orig.tar.gz d7722fa95f8e48505393fa9124497e305994cf1c 35792 pplacer_1.1~alpha19-9+ocaml1.debian.tar.xz dd38bc6eade578062d9bc6322f362635392c9a50 1298452 pplacer-dbgsym_1.1~alpha19-9+ocaml1_amd64.deb 9dda1252ac15c1a58c74227cea274ad78cefb42a 6581 pplacer_1.1~alpha19-9+ocaml1_amd64.buildinfo 9f9bc22b30e435e68e8a30be4b1c0a3393476a99 3461032 pplacer_1.1~alpha19-9+ocaml1_amd64.deb Checksums-Sha256: 90c873fd9cc9508793c7428d033773ce27156213e8f86bc7d02ff1ff76b3905c 1700 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pplacer_1.1~alpha19-9+ocaml1_amd64.deb Checksums-Sha1: 9908d7c18926e41e24cb022a095839f1bd3dffe4 1700 pplacer_1.1~alpha19-9+ocaml1.dsc dd38bc6eade578062d9bc6322f362635392c9a50 1298452 pplacer-dbgsym_1.1~alpha19-9+ocaml1_amd64.deb 9f9bc22b30e435e68e8a30be4b1c0a3393476a99 3461032 pplacer_1.1~alpha19-9+ocaml1_amd64.deb Checksums-Sha256: 90c873fd9cc9508793c7428d033773ce27156213e8f86bc7d02ff1ff76b3905c 1700 pplacer_1.1~alpha19-9+ocaml1.dsc 761666e6039c581735c78b9a54737a91f9ebb2400ebd7b4749beb8b359110111 1298452 pplacer-dbgsym_1.1~alpha19-9+ocaml1_amd64.deb 9e364056e79ad918a85f36e28761e37da5d7e3e769e565f35a1b38fd63cd3aa1 3461032 pplacer_1.1~alpha19-9+ocaml1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 23 Oct 2026 17:01:40 +0000 Build-Path: /build/reproducible-path/pplacer-1.1~alpha19 Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.19-3), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4), binutils (= 2.47.50.20261021-1), binutils-common (= 2.47.50.20261021-1), binutils-x86-64-linux-gnu (= 2.47.50.20261021-1), bsdextrautils (= 2.42.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-3), cpp-16-x86-64-linux-gnu (= 16.2.0-3), cpp-x86-64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-ocaml (= 3.8+ocaml1), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-3), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-3), g++-16-x86-64-linux-gnu (= 16.2.0-3), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-3), gcc-16-base (= 16.2.0-3), gcc-16-x86-64-linux-gnu (= 16.2.0-3), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1), groff-base (= 1.24.2-2), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-3), libatomic1 (= 16.2.0-3), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libbatteries-ocaml-dev (= 3.11.0-2+ocaml1), libbinutils (= 2.47.50.20261021-1), libblkid1 (= 2.42.4-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcamlp-streams-ocaml (= 5.0.1-3+ocaml1), libcamlp-streams-ocaml-dev (= 5.0.1-3+ocaml1), libcap-ng0 (= 0.9.6-1), libcc1-0 (= 16.2.0-3), libcompiler-libs-ocaml-dev (= 5.5.2-1~exp1+ocaml1), libconfig-tiny-perl (= 2.30-1), libcrypt1 (= 1:4.5.2+20251210-1), libcsv-ocaml-dev (= 2.4-3+ocaml1), libctf-nobfd0 (= 2.47.50.20261021-1), libctf0 (= 2.47.50.20261021-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libfindlib-ocaml (= 1.9.8-1+ocaml1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.2.0-3), libgprofng0 (= 2.47.50.20261021-1), libgsl-dev (= 2.8+dfsg-6+b1), libgsl28 (= 2.8+dfsg-6+b1), libgslcblas0 (= 2.8+dfsg-6+b1), libhwasan0 (= 16.2.0-3), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjansson4 (= 2.15.1-1), libjson-perl (= 4.10000-1), liblsan0 (= 16.2.0-3), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmcl-ocaml-dev (= 1:22-282+ds-5+ocaml1), libmd0 (= 1.3.0-1), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncurses-dev (= 6.6+20260608-2), libncurses6 (= 6.6+20260608-2), libncursesw6 (= 6.6+20260608-2), libnum-ocaml (= 1.6-1+ocaml1), libnum-ocaml-dev (= 1.6-1+ocaml1), libocamlgsl-ocaml (= 1.25.1-1+ocaml1), libocamlgsl-ocaml-dev (= 1.25.1-1+ocaml1), libounit-ocaml-dev (= 2.2.7-2+ocaml1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-3.1), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.2.0-3), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2.1), libsframe3 (= 2.47.50.20261021-1), libsmartcols1 (= 2.42.4-1), libsqlite3-0 (= 3.53.4-2), libsqlite3-dev (= 3.53.4-2), libsqlite3-ocaml (= 5.4.2-1+ocaml1), libsqlite3-ocaml-dev (= 5.4.2-1+ocaml1), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libstdlib-ocaml (= 5.5.2-1~exp1+ocaml1), libstdlib-ocaml-dev (= 5.5.2-1~exp1+ocaml1), libsystemd0 (= 262.1-1), libtinfo6 (= 6.6+20260608-2), libtingea-dev (= 21-361-3), libtingea0 (= 21-361-3), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262.1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1), libxmlm-ocaml-dev (= 1.4.0-2+ocaml1), libzip-ocaml (= 1.14-1+ocaml1), libzip-ocaml-dev (= 1.14-1+ocaml1), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), mcl (= 1:22-282+ds-5+ocaml1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), ocaml (= 5.5.2-1~exp1+ocaml1), ocaml-base (= 5.5.2-1~exp1+ocaml1), ocaml-findlib (= 1.9.8-1+ocaml1), ocaml-interp (= 5.5.2-1~exp1+ocaml1), ocamlbuild (= 0.16.1-2+ocaml1), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8-2), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), po-debconf (= 1.0.22), quickjs (= 2025.04.26-1+b2), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-6), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" MAKEFLAGS="" SOURCE_DATE_EPOCH="1792774775" +------------------------------------------------------------------------------+ | Package contents Fri, 23 Oct 2026 17:01:43 +0000 | +------------------------------------------------------------------------------+ pplacer-dbgsym_1.1~alpha19-9+ocaml1_amd64.deb --------------------------------------------- new Debian package, version 2.0. size 1298452 bytes: control archive=660 bytes. 479 bytes, 12 lines control 318 bytes, 3 lines md5sums Package: pplacer-dbgsym Source: pplacer Version: 1.1~alpha19-9+ocaml1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 7024 Depends: pplacer (= 1.1~alpha19-9+ocaml1) Section: debug Priority: optional Description: debug symbols for pplacer Build-Ids: 754ca94806fc082da1af948cd9cec508aa994fc3 95a0af8111dc9da554159c9757bc1fe0fe9877e8 e27ff0366fb2adfb17f50148c864a80a920fef35 drwxr-xr-x root/root 0 2026-10-23 16:59 ./ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/lib/ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/lib/debug/.build-id/75/ -rw-r--r-- root/root 2143096 2026-10-23 16:59 ./usr/lib/debug/.build-id/75/4ca94806fc082da1af948cd9cec508aa994fc3.debug drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/lib/debug/.build-id/95/ -rw-r--r-- root/root 2657896 2026-10-23 16:59 ./usr/lib/debug/.build-id/95/a0af8111dc9da554159c9757bc1fe0fe9877e8.debug drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/lib/debug/.build-id/e2/ -rw-r--r-- root/root 2378704 2026-10-23 16:59 ./usr/lib/debug/.build-id/e2/7ff0366fb2adfb17f50148c864a80a920fef35.debug drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/share/ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-10-23 16:59 ./usr/share/doc/pplacer-dbgsym -> pplacer pplacer_1.1~alpha19-9+ocaml1_amd64.deb -------------------------------------- new Debian package, version 2.0. size 3461032 bytes: control archive=1092 bytes. 958 bytes, 20 lines control 549 bytes, 9 lines md5sums Package: pplacer Version: 1.1~alpha19-9+ocaml1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 20865 Depends: libc6 (>= 2.42), libgsl28 (>= 2.8+dfsg), libsqlite3-0 (>= 3.25.0), libtingea0 (>= 21-361), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/matsen/pplacer Description: phylogenetic placement and downstream analysis Pplacer places reads on a phylogenetic tree. guppy (Grand Unified Phylogenetic Placement Yanalyzer) yanalyzes them. rppr is a helpful tool for working with reference packages. . Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis. Commands: guppy, pplacer, rppr drwxr-xr-x root/root 0 2026-10-23 16:59 ./ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/bin/ -rwxr-xr-x root/root 7989128 2026-10-23 16:59 ./usr/bin/guppy -rwxr-xr-x root/root 6260808 2026-10-23 16:59 ./usr/bin/pplacer -rwxr-xr-x root/root 7087912 2026-10-23 16:59 ./usr/bin/rppr drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/share/ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/share/doc/pplacer/ -rw-r--r-- root/root 1798 2026-10-23 16:59 ./usr/share/doc/pplacer/changelog.Debian.gz -rw-r--r-- root/root 7497 2016-12-30 21:05 ./usr/share/doc/pplacer/changelog.gz -rw-r--r-- root/root 2008 2026-09-24 09:53 ./usr/share/doc/pplacer/copyright drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/share/man/ drwxr-xr-x root/root 0 2026-10-23 16:59 ./usr/share/man/man1/ -rw-r--r-- root/root 1508 2026-10-23 16:59 ./usr/share/man/man1/guppy.1.gz -rw-r--r-- root/root 1827 2026-10-23 16:59 ./usr/share/man/man1/pplacer.1.gz -rw-r--r-- root/root 876 2026-10-23 16:59 ./usr/share/man/man1/rppr.1.gz +------------------------------------------------------------------------------+ | Post Build Fri, 23 Oct 2026 17:01:46 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 23 Oct 2026 17:01:46 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 23 Oct 2026 17:01:47 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 148196 Build-Time: 79 Distribution: unstable-ocaml Host Architecture: amd64 Install-Time: 18 Job: /tmp/tmp.ben.transition-scripts.ULaBxXiOZ7/pplacer_1.1~alpha19-9+ocaml1.dsc Machine Architecture: amd64 Package: pplacer Package-Time: 125 Source-Version: 1.1~alpha19-9+ocaml1 Space: 148196 Status: successful Version: 1.1~alpha19-9+ocaml1 -------------------------------------------------------------------------------- Finished at 2026-10-23T17:01:41Z Build needed 00:02:05, 148196k disk space